A curated list of awesome things related to Vue.js - vuejs/awesome-vue
NuMap - http://www-hsc.usc.edu/~valouev/NuMap/NuMap.html - orphancode/NuMap Contribute to ChrisMaherLab/SV-Hotspot development by creating an account on GitHub. A systematic computational approach for de novo circular RNA identification - duolinwang/CircRNAFisher Segment means de novo segmentation of genome based on DNA methylation in all samples [Type: string] [Default: ‘DeNovoDMR’] Introduction to Gemini Aaron Quinlan University of Utah! quinlanlab.org Please refer to the following Github Gist to find each command for this session. Commands should be copy/pasted from this Gist The next step is updating the configuration files to add these users' credentials. Updating ~/.hg.conf (create this file if it doesn't exist) is easy. These are gzipped Fastq files. The read number can be 1 or 2 and denotes which read the tags come from; paired end flowcells will have both read numbers.
The next step is updating the configuration files to add these users' credentials. Updating ~/.hg.conf (create this file if it doesn't exist) is easy. These are gzipped Fastq files. The read number can be 1 or 2 and denotes which read the tags come from; paired end flowcells will have both read numbers. Scripts and schemas for JSON documents used with the DCC storage system and for building Elasticsearch indexes - BD2KGenomics/dcc-metadata-indexer Contribute to biofold/PhD-SNPg development by creating an account on GitHub. ChromoZoom is a fast, fluid web-based genome browser - rothlab/chromozoom Repository for the community-supported UCSC Search hub - AndrewLien/slugsearch_desktop Simple R script for plotting ideograms and annotating with bed files. - mchaisso/Ideoplot
All-google Search Engine Plugins / Providers for Firefox / IE. The Mycroft Project provides a collection of OpenSearch and Sherlock Search Engine Plugins / Search Providers for Firefox, IE and Chrome. Contribute to nccl-jmli/VarBen development by creating an account on GitHub. ProteoGenomics Converter tool. Contribute to Pride-Toolsuite/PGConverter development by creating an account on GitHub. Command line limited memory PeakSeg functional pruning optimal partitioning algorithm - tdhock/PeakSegFPOP NuMap - http://www-hsc.usc.edu/~valouev/NuMap/NuMap.html - orphancode/NuMap Contribute to ChrisMaherLab/SV-Hotspot development by creating an account on GitHub.
Galaxy visualizations require the UCSC utilities wigToBigWig, bedGraphToBigWig, and faToTwoBit to generate indices that are used for quickly searching data. Download these utilities from UCSC and add them to your (or your Galaxy user's…
Ensure to download the entire folder instead of separate scripts as they are reliant on Another option is to query the UCSC MySQL table chromInfo under each Go to the UCSC Genome browser UCSC and find the human GSTM1 gene. an output file, use get output to download the coordinates of the CpG islands. Either click on the red box on the chromosome, or on the zoom scale on the upper Alternatively, the same BAM files can be downloaded using wget. At the UCSC ENCODE browser, you can find the contol dataset that corresponds to contains global information for each individual chromosome and for the whole genome. list the files we just downloaded ls -lh Download coordinates describing the Exome the chromosome, start, stop, and gene annotation for each probe used in the reagent. In the next section we will be using UCSC liftover to perform this task. Next we will download and install FastTree and the hg19 reference genome To do this, while in the same directory, download the hg19.2bit file from the ucsc website The columns I need are the chromosome (reference) column, a position Download this first http://hgdownload.soe.ucsc.edu/goldenPath/hg38/liftOver/ Each chain file describes conversions between a pair of genome assemblies. This was discovered to be caused by the white gene located on chromosome X at